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Some of the more common bosses are Aquamentus, Dodongo, Digdogger, and Gleeok. The term "boss" is more of a coined phrase than a specific term, since some boss enemies behave quite like regular enemies, while others behave quite differently.
One common characteristic of bosses (which could be considered a bug depending on your point of view) is that many of them do not respond to enemy placement flags. This is usually because the boss has a very rigidly-defined movement pattern.